Paulat, N. S., E. McGuire, K. Subramanian, A. B. Osmanski, D. D. Moreno-Santillán, D. A. Ray#, and J. Xing# (2022) Transposable elements in bats show differential accumulation patterns determined by class and functionality. Life 12(8):1190 [Annotation Files]
Sun, S., M. Miller, Y. Wang, K. M. Tyc, X. Cao, R. T. Scott, Jr., X. Tao, Y. Bromberg, K. Schindler, and J. Xing# (2022) Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing. Human Genetics[Gene Scores]
Tyc, K. M.*, A. Wong*, R. T. Scott, Jr., X. Tao, K. Schindler, and J. Xing# (2021) Analysis of DNA variants in miRNAs and miRNA 3’UTR binding sites in female infertility patients.Laboratory Investigation 101:503–512 [Input data and Code]
Tyc, K. M.*, W. El Yakoubi*, A. Bag, J. Landis, Y. Zhan, N. R. Treff, R. T. Scott, Jr., X. Tao, K. Schindler#, and J. Xing# (2020) Exome sequencing links CEP120 mutation to maternally-derived aneuploid conception risk.Human Reproduction 35:2134–2148 [Variant Calls]
Cao, X.*, Y. Zhang*, L. M. Payer, H. Lords, J. P. Steranka, K. H. Burns, J. Xing# (2020) Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues.Genome Biology 21:185 (bioRxiv https://doi.org/10.1101/2020.05.23.111310) [pMEI genotypes]
Loh, J.*, H. Ha*, T. Lin, N. Sun, K. H. Burns, and J. Xing# (2020) Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions.Mobile DNA 11:12 [Sequence Data][Code]
Zhou A., L. Timothy, J. Xing# (2019) Evaluating nanopore sequencing data processing pipelines for structural variation identification. Genome Biology 20:237 [Sequence Data and Variant Calls][Code]
Fan Z., A. Zhou, N. Osada, J. Yu, J. Jiang, P. Li, L. Du, L. Liu, J. Deng, H. Xu, J. Xing, B. Yue, and J. Li (2018) Ancient hybridization in stump-tailed macaque (Macaca arctoides) and admixture in macaques inferred from whole genome sequences. Molecular Phylogenetics and Evolution 127:376-386 [Sequence Data]
Rustagi N., A. Zhou, W. S. Watkins, E. Gedvilaite, S. Wang, N. Ramesh, D. Muzny, R. A. Gibbs, L. B Jorde#, F. Yu#, and J. Xing# (2017) Extremely low-coverage whole genome sequencing in South Asians captures population genomics information. BMC Genomics 18:396 [Sequence Data][Variant Calls]
Ha H., J. Loh, and J. Xing# (2016) Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA). Mobile DNA 7:15 [Sequence Data]
Bruse S.*, M. Moreau*, Y. Bromberg*, J. Jang, N. Wang, H. Ha, M. Picchi, Y. Lin, R. J. Langley, C. Qualls, J. Klensney-Tait, J. Zabner, S. Leng, J. Mao, S. A. Belinsky, J. Xing#, and T. Nyunoya# (2016) Whole exome sequencing in severe chronic obstructive pulmonary disease.Human Genomics 10:1 [Annotated Variant Calls]
Song, J., J. Liu, S. L. Schnakenberg, H. Ha, J. Xing, and K. C. Chen (2014) Variation in piRNA and transposable element content in strains of Drosophila melanogaster. Genome Biology and Evolution 6(10):2786-2798 [Sequence Data]
Ha H.*, J. Song*, S. Wang, A. Kapusta, C. Feschotte, K. C. Chen and J. Xing# (2014) A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements. BMC Genomics 15:545 [Sequence Data]
